BibDesk Literaturverzeichnis wird mit Biber nicht gefunden

Marius6 · Beitrag von **Marius6** » Di 26. Aug 2014, 22:07

Ich habe mit LaTex bereits ein paar Hausarbeiten verfasst und mich durch so manches Problem gefitzt. Momentan bin ich etwas ratlos:

Ich habe ein Literaturverzeichnis mit BibDesk erstellt. BibDesk hat eine eigene Tex-Vorschau. Sie erkennt alle Quellen und gibt sie in BibDesk aus.

Ich habe die bibliography nun in mein Dokument eingearbeitet, aber sie wird nicht erkannt.

Ein Minimaltest der Bibliography brachte bei einer Quelle Erfolg, funktionierte bei der zweiten aber schon nicht mehr. Ich poste meine Präambel mit Zitatbeispiel, die Bibliiography und die log Datei.

Ich benutze Biber im TexMaker. Bisher funktioniert dies auch sehr gut.
Die biblatex Befehl in den Einstellungen habe ich mit

"/usr/texbin/biber" %.bcf

definiert.

\documentclass[a4paper,fontsize=12pt,titlepage,DIV11]{scrartcl} 
\KOMAoptions{bibliography=totoc}
\usepackage[ngerman]{babel} 
\usepackage[T1]{fontenc}
\usepackage[utf8]{inputenc}

\usepackage{setspace}
\onehalfspacing

 \usepackage{selinput} 
\SelectInputMappings{ 
  adieresis={ä}, 
   germandlbs={ß} 
} 

\usepackage[babel,german=quotes]{csquotes}

\usepackage[backend=biber,style=authoryear]{biblatex}

\DeclareNameAlias{sortname}{last-first}
\renewcommand*{\mkbibnamelast}[1]{\textsc{#1}}
\addbibresource{Lit}

\begin{document}

Die Quelle, die gefunden wird: \parencite{Fromme2004}
...aber \parencite{Arora2013} wird nicht gefunden.

\printbibliography
\end{document}

Die Log Datei:

This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013) (format=pdflatex 2014.2.18)  26 AUG 2014 21:42
entering extended mode
 restricted \write18 enabled.
 %&-line parsing enabled.
**Expose.tex
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LaTeX2e <2011/06/27>
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 0 named destinations out of 1000 (max. 500000)
 1 words of extra memory for PDF output out of 10000 (max. 10000000)

Selbstverständlich habe ich "Bibern" und kompilieren wiederholt.

Hier noch ein Kurzform meiner Testbibliography "Lit"

@article{Fromme2004,
	Abstract = {bla bla},
	Author = {EK Fromme and},
	Date-Added = {2014-05-16 15:01:34 +0000},
	Date-Modified = {2014-08-21 13:43:09 +0000},
	Doi = {0.1200/JCO.2004.03.025},
	Journal = {Journal of ...},
	Month = {September},
	Number = {17},
	Pages = {3485-3490},
	Rating = {5},
	Title = {How accurate is...},
	Volume = {22},
	Year = {2004}}

@article{Arora2013,
	Abstract = {bla bla},
	Author = {NK Arora and RE Jensen},
	Date-Added = {2014-08-08 15:14:19 +0000},
	Date-Modified = {2014-08-21 13:50:52 +0000},
	Journal = {Journal of ...},
	Month = {November},
	Number = {13},
	Pages = {3963-3970},
	Rating = {5},
	Title = {Patient-Physician Com...},
	Volume = {31},
	Year = {2013}}

Ich habe für diesen Beitrag das Abstract und den link zur pdf Datei entfernt.
Die Testbibliography habe ich via copy and paste aus der .tex Datei der Daten gezogen, daher fehlt der übliche Kopf

... erstellt mit BibDesk...

Die originale Datenbank enthält 30 Quellen, fasst aber nur 2 verschiedene Medien (Artikel und Bücher).

Für jede Hilfe bin ich sehr dankbar und werde sie in Ruhe ausprobieren.

Viele Dank!

Beinschuss · Beitrag von **Beinschuss** » Di 26. Aug 2014, 22:33

Versuch mal:

\addbibresource{Lit.bib}

Helmut

Marius6 · Beitrag von **Marius6** » Mi 27. Aug 2014, 20:10

Danke für die gute Idee! Hilft aber leider nicht.

Ich habe heute auch TeXlive und TeXmaker auf den neuesten Stand gebracht. Leider bleibt die Fehlermeldung die gleiche...

Beinschuss · Beitrag von **Beinschuss** » Mi 27. Aug 2014, 20:17

Dann zeige uns den Inhalt der .blg-Datei.

Helmut

Marius6 · Beitrag von **Marius6** » Mi 27. Aug 2014, 20:58

Leider ist ein neues, mir scheint komplexes Problem aufgetreten. Die Log Datei besagt, kurz gesagt
[quoteTex capacity exceeded][/quote]

Mit der Minimaldatei geht es, wenn ich allerdings im Text \itemize hinzunehmen und aufzähle gibt es jede Menge Fehlermeldungen. Ich versuche das in einem Minimalbeispiel darzustellen

\documentclass[paper=a4,fontsize=12pt,titlepage,DIV11]{scrartcl} 

\usepackage[ngerman]{babel} 
\usepackage[T1]{fontenc} 
\usepackage[utf8]{inputenc} 
\usepackage{lmodern}
\usepackage{typearea}
\usepackage[automark]{scrpage2}

\setlength{\headheight}{2.0\baselineskip} 

\usepackage{setspace} 
\onehalfspacing 

 \usepackage{selinput} 
\SelectInputMappings{ 
  adieresis={ä}, 
   germandlbs={ß} } 

\usepackage[babel,german=quotes]{csquotes} 
\usepackage[backend=biber,style=authoryear]{biblatex} 

\DefineBibliographyStrings{ngerman}{and={\&}}
\DefineBibliographyStrings{ngerman}{andothers={et\addabbrvspace al\adddot}}
\DeclareNameAlias{sortname}{last-first} 
\renewcommand*{\mkbibnamelast}[1]{\textsc{#1}} 
\addbibresource{Lit.bib} 
\begin{document} 
\section*{XXX}

Das Zitat, das geht: \parencite{Fromme2004}
und jenes, das nicht geht: \parencite{Arora2013}.


\section*{Forschungsfragen}

 \begin{itemize}
 \item Welche Erkenntnisse ?
 \item Gibt es ?
 \item Welche Veränderungen ?
 \end{itemize}
 
\section*{Methodik}

 \begin{itemize}
 \item XYZ
 \item ABC
 \item Hallo
 \end{itemize}

\printbibliography 
\end{document}

Die Log Datei dazu:

This is pdfTeX, Version 3.14159265-2.6-1.40.15 (TeX Live 2014) (preloaded format=pdflatex 2014.8.27)  27 AUG 2014 20:56
entering extended mode
 restricted \write18 enabled.
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Runaway argument?
{NHL Nachsorgepatienten wurden befragt, ob sie HRQOL Probleme mit ihr\ETC.
! File ended while scanning use of \field.
<inserted text> 
                \par 
l.28 \begin{document}
                     
I suspect you have forgotten a `}', causing me
to read past where you wanted me to stop.
I'll try to recover; but if the error is serious,
you'd better type `E' or `X' now and fix your file.

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LaTeX Warning: Citation 'Fromme2004' on page 1 undefined on input line 31.

! Illegal parameter number in definition of \NewCount.
<to be read again> 
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l.37  \begin{itemize}
                     
You meant to type ## instead of #, right?
Or maybe a } was forgotten somewhere earlier, and things
are all screwed up? I'm going to assume that you meant ##.

! Illegal parameter number in definition of \NewCount.
<to be read again> 
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l.37  \begin{itemize}
                     
You meant to type ## instead of #, right?
Or maybe a } was forgotten somewhere earlier, and things
are all screwed up? I'm going to assume that you meant ##.

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! Undefined control sequence.
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l.37  \begin{itemize}
                     
The control sequence at the end of the top line
of your error message was never \def'ed. If you have
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spelling (e.g., `I\hbox'). Otherwise just continue,
and I'll forget about whatever was undefined.

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not appear between \csname and \endcsname.

! TeX capacity exceeded, sorry [input stack size=5000].
\font@name ->
             \T1/lmss/bx/n/17.28 
l.37  \begin{itemize}
                     
If you really absolutely need more capacity,
you can ask a wizard to enlarge me.

 
Here is how much of TeX's memory you used:
 9810 strings out of 493117
 160496 string characters out of 6135433
 623047 words of memory out of 5000000
 13156 multiletter control sequences out of 15000+600000
 21814 words of font info for 22 fonts, out of 8000000 for 9000
 1145 hyphenation exceptions out of 8191
 5000i,1n,9991p,847b,1106s stack positions out of 5000i,500n,10000p,200000b,80000s
!  ==> Fatal error occurred, no output PDF file produced!

Ich verstehe nicht, was er für ein Problem mit dem Befehl \begin{document} und \begin{itemize} hat.

Wie gesagt, update ist heute gelaufen.

Marius6 · Beitrag von **Marius6** » Mi 27. Aug 2014, 21:23

Sorry, ich habe Deinen post zu spät gelesen!

[0] Config.pm:318> INFO - This is Biber 1.8
[0] Config.pm:318> INFO - This is Biber 1.8
[1] Config.pm:321> INFO - Logfile is 'Test2.blg'
[137] biber-darwin:275> INFO - === Wed Aug 27, 2014, 21:25:56
[137] Biber.pm:333> INFO - Reading 'Test2.bcf'
[264] Biber.pm:630> INFO - Found 2 citekeys in bib section 0
[300] Biber.pm:3053> INFO - Processing section 0
[332] Biber.pm:3190> INFO - Looking for bibtex format file 'Lit.bib' for section 0
[335] bibtex.pm:937> INFO - Decoding LaTeX character macros into UTF-8
[339] bibtex.pm:812> INFO - Found BibTeX data source 'Lit.bib'
[414] Biber.pm:2939> INFO - Overriding locale 'en_US.UTF-8' default tailoring 'variable = shifted' with 'variable = non-ignorable'
[414] Biber.pm:2945> INFO - Sorting 'entry' list 'nyt' keys
[415] Biber.pm:2949> INFO - No sort tailoring available for locale 'en_US.UTF-8'
[424] bbl.pm:482> INFO - Writing 'Test2.bbl' with encoding 'UTF-8'
[426] bbl.pm:555> INFO - Output to Test2.bbl

Beinschuss · Beitrag von **Beinschuss** » Mi 27. Aug 2014, 21:51

Das neue Minimalbeispiel läuft bei mir fehlerlos. Hier die File List zum Vergleichen:

 *File List*
scrartcl.cls    2013/12/19 v3.12 KOMA-Script document class (article)
scrkbase.sty    2013/12/19 v3.12 KOMA-Script package (KOMA-Script-dependent bas
ics and keyval usage)
 scrbase.sty    2013/12/19 v3.12 KOMA-Script package (KOMA-Script-independent b
asics and keyval usage)
  keyval.sty    1999/03/16 v1.13 key=value parser (DPC)
scrlfile.sty    2013/12/19 v3.12 KOMA-Script package (loading files)
tocbasic.sty    2013/12/19 v3.12 KOMA-Script package (handling toc-files)
scrsize12pt.clo    2013/12/19 v3.12 KOMA-Script font size class option (12pt)
typearea.sty    2013/12/19 v3.12 KOMA-Script package (type area)
   babel.sty    2008/07/08 v3.8m The Babel package
 bblopts.cfg    2006/07/31 v1.0 MiKTeX 'babel' configuration
ngermanb.ldf    2008/07/06 v2.6n new German support from the babel system
 fontenc.sty
   t1enc.def    2005/09/27 v1.99g Standard LaTeX file
inputenc.sty    2008/03/30 v1.1d Input encoding file
    utf8.def    2008/04/05 v1.1m UTF-8 support for inputenc
   t1enc.dfu    2008/04/05 v1.1m UTF-8 support for inputenc
  ot1enc.dfu    2008/04/05 v1.1m UTF-8 support for inputenc
  omsenc.dfu    2008/04/05 v1.1m UTF-8 support for inputenc
 lmodern.sty    2009/10/30 v1.6 Latin Modern Fonts
scrpage2.sty    2013/12/19 v3.12 KOMA-Script package (page head and foot)
setspace.sty    2011/12/19 v6.7a set line spacing
selinput.sty    2007/09/09 v1.2 Semi-automatic input encoding detection (HO)
kvsetkeys.sty    2012/04/25 v1.16 Key value parser (HO)
infwarerr.sty    2010/04/08 v1.3 Providing info/warning/error messages (HO)
etexcmds.sty    2011/02/16 v1.5 Avoid name clashes with e-TeX commands (HO)
ifluatex.sty    2010/03/01 v1.3 Provides the ifluatex switch (HO)
stringenc.sty    2011/12/02 v1.10 Convert strings between diff. encodings (HO)
 ltxcmds.sty    2011/11/09 v1.22 LaTeX kernel commands for general use (HO)
pdfescape.sty    2011/11/25 v1.13 Implements pdfTeX's escape features (HO)
pdftexcmds.sty    2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX (HO)
   ifpdf.sty    2011/01/30 v2.3 Provides the ifpdf switch (HO)
kvoptions.sty    2011/06/30 v3.11 Key value format for package options (HO)
 ix-name.def    2011/05/27 v1.10 Name list (inputenx)
 se-utf8.def    2011/12/02 v1.10 stringenc: UTF-8
se-iso-8859-1.def    2011/12/02 v1.10 stringenc: ISO-8859-1
x-iso-8859-1.def    2011/05/27 v1.10 Input encoding iso-8859-1 (inputenx)
csquotes.sty    2011/10/22 v5.1d context-sensitive quotations
etoolbox.sty    2011/01/03 v2.1 e-TeX tools for LaTeX
    etex.sty    1998/03/26 v2.0 eTeX basic definition package (PEB)
csquotes.def    2011/10/22 v5.1d csquotes generic definitions
csquotes.cfg    
biblatex.sty    2013/11/25 v2.8a programmable bibliographies (PK/JW/AB)
biblatex2.sty    2013/11/25 v2.8a programmable bibliographies (biber) (PK/JW/AB
)
  logreq.sty    2010/08/04 v1.0 xml request logger
  logreq.def    2010/08/04 v1.0 logreq spec v1.0
  ifthen.sty    2001/05/26 v1.1c Standard LaTeX ifthen package (DPC)
     url.sty    2013/09/16  ver 3.4  Verb mode for urls, etc.
  blx-dm.def
authoryear.dbx
biblatex-dm.cfg
blx-compat.def    2013/11/25 v2.8a biblatex compatibility (PK/JW/AB)
biblatex.def    
standard.bbx    2013/11/25 v2.8a biblatex bibliography style (PK/JW/AB)
authoryear.bbx    2013/11/25 v2.8a biblatex bibliography style (PK/JW/AB)
authoryear.cbx    2013/11/25 v2.8a biblatex citation style (PK/JW/AB)
biblatex.cfg    
  german.lbx    2013/11/25 v2.8a biblatex localization (PK/JW/AB)
 ngerman.lbx    2013/11/25 v2.8a biblatex localization (PK/JW/AB)
   t1lmr.fd    2009/10/30 v1.6 Font defs for Latin Modern
 itemize.bbl
  t1lmss.fd    2009/10/30 v1.6 Font defs for Latin Modern
  omslmr.fd    2009/10/30 v1.6 Font defs for Latin Modern
 omslmsy.fd    2009/10/30 v1.6 Font defs for Latin Modern
  t1lmtt.fd    2009/10/30 v1.6 Font defs for Latin Modern
  ot1lmr.fd    2009/10/30 v1.6 Font defs for Latin Modern
  omllmm.fd    2009/10/30 v1.6 Font defs for Latin Modern
 omxlmex.fd    2009/10/30 v1.6 Font defs for Latin Modern
 ***********

Vielleicht hilft es, alle Hilfsdateien zu löschen und dann neu zu kompilieren.

Helmut

Marius6 · Beitrag von **Marius6** » Do 28. Aug 2014, 12:40

Leider kann ich mit Deinen Files nicht viel anfangen. Da fehlt mir einfach das Hintergrundwissen.
Die Hilfsdateien löschen und nur kompilieren habe ich mehrfach, auch jetzt noch mal versucht. Im Rahmen des Troubleshooting habe ich nach und nach die Testdatei mit Inhalten erweitert, bis ich alle Befehle und allen Text der Originaldatei integriert hatte. Interessanterweise ließ sie sich einige Male kompilieren und schließlich nicht mehr.
Mich machen folgende Meldungen in der Log Datei stutzig:

! File ended while scanning use of \field.<inserted text>\par \begin{document}
! File ended while scanning use of \field.<inserted text>\par \begin{document}
! Missing \endcsname inserted.<to be read again>\global \begin{itemize}
! TeX capacity exceeded, sorry [input stack size=5000].
\font@name ->
\T1/lmss/bx/n/17.28
l.32 \begin{itemize}

Wie kann denn die Kapazität bei 46 TeX Zeilen erschöpft sein?

Außerdem frage ich mich, was

[415] Biber.pm:2949> INFO - No sort tailoring available for locale 'en_US.UTF-8'

bedeutet. Ist hier eventuell eine Spracheinstellung falsch? Mit ist das en_US vor UTF-8 unbekannt...

Mit TeXworks bekomme ich das gleiche Ergebnis.

u_fischer · Beitrag von **u_fischer** » Do 28. Aug 2014, 15:17

Ich finde den Text "{NHL Nachsorgepatienten wurden befragt, ob sie HRQOL Probleme mit ihr" (aus deiner Fehlermeldung) nirgendwo in deinem Beispiel.

D.h. du kompilierst irgendwas anderes. Wie sollen wir dir da sagen, was du falsch machst?

Wie kann denn die Kapazität bei 46 TeX Zeilen erschöpft sein?

Du hast irgendeine Schleife drin.

Marius6 · Beitrag von **Marius6** » Do 28. Aug 2014, 15:48

Entschuldigung, ich habe in meiner geposteten Test Bibliography die Abstracts herausgenommen, um den Thread kurz zu halten.

Die Dateien selbst sind aber nicht verändert!
Ich wollte die Log Datei aufgrund ihrer Größe nicht noch einmal posten.

Mit der Schleife wirst Du Recht haben. Die Test Datei lässt sich vorübergehend kompilieren, nach einigen Kompilierungsdurchläufen und dem Wechsel zwischen ähnlichen Dateien aber wieder nicht.

Hast Du eine Idee, wie ich diese Schleife beseitigen kann?